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High throughput data analysis

eagle-i ID

http://eagle-i.itmat.upenn.edu/i/00000138-917c-9fe3-9cd7-d7e280000000

Resource Type

  1. Data analysis service

Properties

  1. Fee for service
    Yes
  2. Resource Description
    "With acquisition of a massive parallel sequencer (Illumina [SOLEXA] Genome Analyzer) and microarray platform (Illumina BeadStation) along with other high-throughput experimental technologies, the Wistar Institute's Cancer Center is now well positioned to pursue new avenues of cancer research, particularly in understanding and modeling the genomic changes in cancer development and progression. These technologies generate huge genome-wide multiple data-sets that require equally complex and sophisticated databases, and analyses tools. The bioinformatics shared facility collaborates with the Center for Systems and Computational Biology to develop integrative analytical frameworks for the analysis of the data sets generated by Wistar investigators. The bioinformatics shred facility will provide consulting and integrative data-mining support for: • Analyzing SOLEXA data including ChIP-seq, RNA-seq (digital gene expression), small RNA-seq, RNAs associated with RNA binding proteins, SNP genotyping, genome re-sequencing, and de-novo sequencing. • Analyzing microarray data including gene expression, ChIP-chip, methylation profiling, copy number variation (CNV), SNP genotyping, miRNA profiling, protein/peptide array data. • Analyzing proteomics data (e.g. mass spectrometry-based spectra, LCMS, DIGE). • Analyzing molecular screening data by working with the molecular screening facility."
  3. Service Fee URL
    http://www.wistar.org/our-science/shared-facilities/bioinformatics-facility/how-obtain-services-user-fees
  4. Service Provided by
    Bioinformatics Facility (Wistar)
  5. Website(s)
    http://www.wistar.org/our-science/shared-facilities/bioinformatics-facility/services
  6. Related Technique
    Nucleic acid microarray assay
  7. Related Technique
    Next generation DNA sequencing
  8. Related Technique
    2D PAGE
  9. Related Technique
    RNA sequencing
  10. Related Technique
    Mass spectrometry data analysis
  11. Related Technique
    Differential gel electrophoresis
  12. Related Technique
    Genotyping assay
  13. Related Technique
    Protein expression profiling
  14. Related Technique
    ChIP-seq assay
  15. Related Technique
    ChIP-chip assay
 
RDFRDF
 
Provenance Metadata About This Resource Record
  1. workflow state
    Published
  2. contributor
    fcoldren
  3. created
    2012-07-16T15:33:22.470-05:00
  4. creator
    apizarro (Angel Pizarro)
  5. modified
    2015-10-22T13:13:39.310-04:00

Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016