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Sequence analysis and database search support

eagle-i ID

http://eagle-i.itmat.upenn.edu/i/00000138-de27-f6b9-eb5b-b63c80000000

Resource Type

  1. Data analysis service

Properties

  1. Fee for service
    Yes
  2. Resource Description
    "<b>Sequence Assembly & Analysis</b> Assembly of sequences into a contig, identification of ORFs, analysis of properties of the predicted protein, and other analyses can be performed at the facility using MacVector and other software. These services are included at no charge for large sequencing projects, and they are available at no charge to Cancer Center and Department of Genetics members. <b>Database Searches</b> BLAST, BLOCKS, BLITZ, PROSITE and FASTA searches are performed using WWW or e-mail servers at no charge. Please contact the facility to arrange for database searches or for training. Genomic sequences can also be processed to identify interspersed repeats, low complexity regions, GRAIL exons, transcription factor binding sites, frequency of mono, di, and tri nucleotides, and other features. Genomic sequences can also be submitted to the GAIA genome annotation system at the Bioinformatics Laboratory. Facility staff will also submit sequences to Genebank if requested by the investigator."
  3. Service Fee URL
    http://www.med.upenn.edu/genetics/dnaseq/pricing.shtml
  4. Related Resource
    MacVector
  5. Service Provided by
    DNA Sequencing Facility (Penn)
  6. Website(s)
    http://www.med.upenn.edu/genetics/dnaseq/sanger_anal.shtml
  7. Related Technique
    Bioinformatics analysis
  8. Related Technique
    DNA sequencing assay
 
RDFRDF
 
Provenance Metadata About This Resource Record
  1. workflow state
    Published
  2. contributor
    fcoldren
  3. created
    2012-07-31T12:55:24.121-05:00
  4. creator
    fcoldren
  5. modified
    2013-08-23T14:05:31.448-04:00

Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016