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Initial analysis of sequencing data

eagle-i ID

http://eagle-i.itmat.upenn.edu/i/00000139-49eb-8c6d-eb5b-b63c80000000

Resource Type

  1. Data analysis service

Properties

  1. Fee for service
    Yes
  2. Resource Description
    "We offer a complete set of initial analyses for most techniques. The initial analysis usually covers cleaning and trimming, alignment, and quantification. In many cases, differential analyses are available. Analyses available include: • ChIP-Seq: Peak calls, list of target genes • miR-Seq: Expression levels for known miRNAs • RNA-Seq: Expression levels for known genes, exon junctions, coverage • HITS-CLIP: Position and intensity of footprints on known transcripts and genome • Exome-Seq: SNPs and small structural variants We do not offer advanced analysis, but will consider developing pipelines that will be useful to many investigations, e.g., for new techniques. Charges may include the cost of computing as many of the techniques may require up to a 1000 hours of CPU time."
  3. Service Fee URL
    https://ngsc.med.upenn.edu/#/pricing
  4. Related Resource
    Illumina HiSeq 2000
  5. Related Resource
    Illumina miSeq
  6. Service Provided by
    Next-Generation Sequencing Core (Penn)
  7. Website(s)
    https://ngsc.med.upenn.edu/#/
  8. Related Technique
    Data analysis
  9. Related Technique
    Sequencing
 
RDFRDF
 
Provenance Metadata About This Resource Record
  1. workflow state
    Published
  2. contributor
    fcoldren
  3. created
    2012-08-21T11:55:54.313-05:00
  4. creator
    fcoldren
  5. modified
    2016-05-04T17:33:12.188-04:00

Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016