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Waveclock

eagle-i ID

http://eagle-i.itmat.upenn.edu/i/0000013a-4aee-fda4-01af-beb880000000

Resource Type

  1. Algorithmic software component

Properties

  1. Resource Description
    "Waveclock is an R function designed to assess the period and amplitude of cycling cell luminescence data. The function reconstructs the modal frequencies from a continuous wavelet decomposition of the luminescence data using the ’crazy climbers’ algorithm described in ‘‘Practical Time-Frequency Analysis: Gabor and Wavelet Transforms with an Implementation in S’’, by Rene Carmona, Wen L. Hwang and Bruno Torresani, Academic Press, 1998." Waveclock can be used to analyze other physiological measurement data, such as blood pressure and gene expression data.
  2. Used by
    Institute for Translational Medicine and Therapeutics
  3. Data Input
    Time-course data (regularly spaced) (R class ts)
  4. Data Output
    Circadian parameters
  5. Related Publication or Documentation
    WAVECLOCK: wavelet analysis of circadian oscillation.
  6. Website(s)
    http://cran.r-project.org/src/contrib/Archive/waveclock/
  7. Related Technique
    Cellular assay
  8. Related Technique
    Physiological assay
  9. Developed by
    Price, Thomas, Ph.D.
  10. Software license
    GNU General Public License
  11. Algorithm used
    Continuous Wavelet Transform (CWT)-based peak detection algorithm
  12. Coded in
    R language
 
RDFRDF
 
Provenance Metadata About This Resource Record
  1. workflow state
    Published
  2. contributor
    fcoldren
  3. created
    2012-10-10T08:49:10.361-05:00
  4. creator
    fcoldren
  5. modified
    2014-01-06T14:21:21.344-05:00

Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016