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RNA self containment

eagle-i ID

http://eagle-i.itmat.upenn.edu/i/0000013a-c1ea-b643-d69a-d90d80000000

Resource Type

  1. Algorithmic software component

Properties

  1. Resource Description
    "RNA self containment is an implementation of the Self-Containment Index (SC), as described in the related publication. It measures the robustness of RNA structures to changes in the surrounding sequence context, which we hypothesize to be a hallmark of structural modularity. SC values range from 0.0 (no self containment) to 1.0 (completely self contained)." "Secondary structure prediction is performed using the Vienna RNA Package, provided by Ivo Hofacker, et al, at the Institute for Theoretical Chemistry of the University of Vienna."
  2. Used by
    Kim Laboratory: Computational Evolutionary Biology
  3. Operating System
    Linux
  4. Operating System
    Mac OS X
  5. Operating System
    Unix
  6. Operating System
    Web based
  7. Operating System
    Windows
  8. Data Input
    RNA sequence
  9. Data Output
    Self-Containment Index value
  10. Software purpose
    Molecular structure comparison objective
  11. Related Publication or Documentation
    Self Containment, a Property of Modular RNA Structures, Distinguishes microRNAs
  12. Website(s)
    http://kim.bio.upenn.edu/software/rna-sc.shtml
  13. Related Technique
    Bioinformatics analysis
  14. Software license
    Academic software license
  15. Coded in
    Python
 
RDFRDF
 
Provenance Metadata About This Resource Record
  1. workflow state
    Published
  2. contributor
    fcoldren
  3. created
    2012-11-02T12:22:16.996-04:00
  4. creator
    fcoldren
  5. modified
    2013-04-02T12:40:13.722-04:00

Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016