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RNA self containment
eagle-i ID
http://eagle-i.itmat.upenn.edu/i/0000013a-c1ea-b643-d69a-d90d80000000
Resource Type
Properties
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Resource Description
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"RNA self containment is an implementation of the Self-Containment Index (SC), as described in the related publication. It measures the robustness of RNA structures to changes in the surrounding sequence context, which we hypothesize to be a hallmark of structural modularity. SC values range from 0.0 (no self containment) to 1.0 (completely self contained)."
"Secondary structure prediction is performed using the Vienna RNA Package, provided by Ivo Hofacker, et al, at the Institute for Theoretical Chemistry of the University of Vienna."
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Used by
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Kim Laboratory: Computational Evolutionary Biology
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Operating System
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Linux
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Operating System
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Mac OS X
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Operating System
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Unix
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Operating System
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Web based
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Operating System
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Windows
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Data Input
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RNA sequence
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Data Output
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Self-Containment Index value
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Software purpose
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Molecular structure comparison objective
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Related Publication or Documentation
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Self Containment, a Property of Modular RNA Structures, Distinguishes microRNAs
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Website(s)
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http://kim.bio.upenn.edu/software/rna-sc.shtml
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Related Technique
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Bioinformatics analysis
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Software license
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Academic software license
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Coded in
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Python
