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hiAnnotator

eagle-i ID

http://eagle-i.itmat.upenn.edu/i/0000013a-d179-a25a-d69a-d90d80000000

Resource Type

  1. Algorithmic software component

Properties

  1. Resource Description
    "hiAnnotator contains set of functions which allow users to annotate a RangedData object with custom set of annotations. The basic philosophy of this package is to take two RangedData objects (query & subject) with common set of space (i.e. chromosomes) and return associated annotation per space and rows from the query matching space and rows from the subject (i.e. genes or cpg islands). The package comes with three types of annotation functions which calculates if a position from query is: within a feature, near a feature, or count features in defined window sizes. Moreover, one can utilize parallel backend for each annotation function to utilize multiple processors. In addition, the package is equipped with a wrapper function, which finds appropriate columns needed to make a RangedData object from a common data frame."
  2. Used by
    Bushman Laboratory
  3. Version
    1.0
  4. Data Input
    Table of genomic locations (chromosome, strand, position, and other meta-data)
  5. Data Output
    Annotated table of genomic locations
  6. Software purpose
    Data annotation objective
  7. Website(s)
    https://github.com/malnirav/hiAnnotator
  8. Developed by
    Malani, Nirav, M.S.
  9. Coded in
    R language
 
RDFRDF
 
Provenance Metadata About This Resource Record
  1. workflow state
    Published
  2. contributor
    fcoldren
  3. created
    2012-11-05T11:50:50.177-05:00
  4. creator
    fcoldren
  5. modified
    2013-04-02T12:41:54.769-04:00

Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016