hiReadsProcessor

eagle-i ID

Resource Type

Properties

1. Resource Description

   "hiReadsProcessor contains set of functions which allow users to process single-end LM-PCR sequence data coming out of the 454 sequencer. Given an excel file containing parameters for demultiplexing and sample metadata, the functions automate trimming of adaptors and identification of the genomic product. In addition, if IntSites MySQL database is setup, the sequence attrition is loaded into respective tables for post processing setup and analysis."

2. Used by

   Bushman Laboratory

3. Data Input

   List of sequencing files (raw 454 sequence data)

4. Data Input

   Sample information table for sequencing files

5. Data Output

   Table of genomic locations (ready for hiAnnotator)

6. Website(s)

   https://github.com/malnirav/hiReadsProcessor

7. Related Technique

   Next generation DNA sequencing

8. Developed by

   Malani, Nirav., MS

9. Coded in

   R language