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hiReadsProcessor
eagle-i ID
http://eagle-i.itmat.upenn.edu/i/0000013a-d1a8-6fd1-d69a-d90d80000000
Resource Type
Properties
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Resource Description
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"hiReadsProcessor contains set of functions which allow users to process single-end LM-PCR sequence data coming out of the 454 sequencer. Given an excel file containing parameters for demultiplexing and sample metadata, the functions automate trimming of adaptors and identification of the genomic product. In addition, if IntSites MySQL database is setup, the sequence attrition is loaded into respective tables for post processing setup and analysis."
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Used by
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Bushman Laboratory
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Data Input
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List of sequencing files (raw 454 sequence data)
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Data Input
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Sample information table for sequencing files
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Data Output
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Table of genomic locations (ready for hiAnnotator)
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Website(s)
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https://github.com/malnirav/hiReadsProcessor
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Related Technique
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Next generation DNA sequencing
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Developed by
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Malani, Nirav., MS
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Coded in
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R language
