eagle-i The University of PennsylvaniaThe University of Pennsylvania
See it in Search
This page is a preview of the following resource. Continue onto eagle-i search using the button on the right to see the full record.


eagle-i ID


Resource Type

  1. Algorithmic software component


  1. Resource Description
    "hiReadsProcessor contains set of functions which allow users to process single-end LM-PCR sequence data coming out of the 454 sequencer. Given an excel file containing parameters for demultiplexing and sample metadata, the functions automate trimming of adaptors and identification of the genomic product. In addition, if IntSites MySQL database is setup, the sequence attrition is loaded into respective tables for post processing setup and analysis."
  2. Used by
    Bushman Laboratory
  3. Data Input
    List of sequencing files (raw 454 sequence data)
  4. Data Input
    Sample information table for sequencing files
  5. Data Output
    Table of genomic locations (ready for hiAnnotator)
  6. Website(s)
  7. Related Technique
    Next generation DNA sequencing
  8. Developed by
    Malani, Nirav., MS
  9. Coded in
    R language
Provenance Metadata About This Resource Record
  1. workflow state
  2. contributor
  3. created
  4. creator
  5. modified
Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016