See it in Search
This page is a preview of the following resource. Continue onto eagle-i search using the button on the right to see the full record.
Whole-genome Association Mapping Machina
eagle-i ID
http://eagle-i.itmat.upenn.edu/i/0000013d-4173-d1bc-ae62-bb6880000000
Resource Type
Properties
-
-
Uses algorithmic software component
-
Integrated Haplotype Score calculator
-
-
Resource Description
-
"WHAMM is a free, open-source analysis package designed to estimate patterns of homozygosity in whole genome data sets, as well as perform a range of association analyses and summaries on the resultant output. Additional functionality will be added to also scan whole-genome platform data for signatures of extended haplotype homozygosity consistent with positive selection, summarized with the integrated Haplotype Score (iHS), though this functionality remains to be implemented."
-
-
Additional Name
-
WHAMM
-
-
Used by
-
Voight Laboratory
-
-
Version
-
0.14a
-
-
Operating System
-
Linux
-
-
Operating System
-
Unix
-
-
Data Input
-
Phased genotype data
-
-
Data Input
-
Unphased genotype data
-
-
Data Input
-
Marker map
-
-
Data Input
-
Sample information
-
-
Data Input
-
Phenotype data
-
-
Data Input
-
Phased data loader
-
-
Data Input
-
Keeplist
-
-
Data Output
-
Log
-
-
Data Output
-
Segment map
-
-
Data Output
-
Haplotype frequencies
-
-
Data Output
-
Homozygosity probabilities
-
-
Data Output
-
Forward/Backward painting
-
-
Data Output
-
Estimated homozygosity parameters
-
-
Data Output
-
Homozygosity dosage file
-
-
Data Output
-
Sample listings
-
-
Data Output
-
Basic association results
-
-
Data Output
-
Regression association results
-
-
Software purpose
-
Population genetics analysis objective
-
-
Website(s)
-
http://coruscant.itmat.upenn.edu/whamm/index.html
-
-
Developed by
-
Voight, Benjamin F., PhD
-
-
Algorithm used
-
Fischer's Exact Test
-
-
Coded in
-
Perl
