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Cross-Phenotype Meta-Analysis statistic algorithm

eagle-i ID

http://eagle-i.itmat.upenn.edu/i/0000013d-417c-2cc4-ae62-bb6880000000

Resource Type

  1. Algorithmic software component

Properties

  1. Resource Description
    This novel statistic for Cross Phenotype Meta-Analysis (CPMA) detects association of a SNP to multiple, but not necessarily all, phenotypes. CPMA tests deviation from the expected exponential behaviour of -log(p) for a set of associations to a SNP. CPMA-signed algorithm was updated slightly, ensuring that the statistics is signed given the direction of the non-randomness (negative values if the distribution of p-values are non-random in favor of p-values > 0.5, say).
  2. Additional Name
    CPMA statistic
  3. Used by
    Voight Laboratory
  4. Data Input
    SNP data
  5. Data Output
    SNP-wise CPMA statistic
  6. Software purpose
    Statistical analysis and modeling objective
  7. Software purpose
    Population genetics analysis objective
  8. Related Publication or Documentation
    Pervasive sharing of genetic effects in autoimmune disease
  9. Website(s)
    http://coruscant.itmat.upenn.edu/software.html
  10. Algorithm used
    Likelihood method
  11. Coded in
    R language
 
RDFRDF
 
Provenance Metadata About This Resource Record
  1. workflow state
    Published
  2. contributor
    fcoldren
  3. created
    2013-03-06T15:59:40.378-05:00
  4. creator
    fcoldren
  5. modified
    2013-03-15T13:59:56.081-04:00

Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016