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Crimson

eagle-i ID

http://eagle-i.itmat.upenn.edu/i/0000013d-603d-564c-5757-7bd780000000

Resource Type

  1. Algorithmic software suite

Properties

  1. Related grant number
    CIPRES
  2. Resource Description
    "Crimson facilitates the extraction of sub-trees from very large phylogenetic trees. Trees are loaded into a shared database and sampled according to schemes controlled by the user. Comprehensive graphical dialogs allow users to easily manage and query trees in the database. Queries can be stored in the database to be shared with other users and moved between databases. A command line interface enables users to write their own function and scripts to manage the database, manipulate the trees and queries, and automate any of the built-in functions."
  3. Used by
    Kim Laboratory: Computational Evolutionary Biology
  4. Operating System
    Linux
  5. Operating System
    Mac OS X
  6. Operating System
    Windows (2000 or later)
  7. Data Input
    Phylogenetic tree
  8. Data Output
    Extracted sub-trees
  9. Software purpose
    Phylogenetic analysis objective
  10. Website(s)
    http://kim.bio.upenn.edu/software/crimson.shtml
  11. Developed by
    Kim, Junhyong, Ph.D.
  12. Developed by
    Fisher, Stephen, Ph.D.
  13. Software license
    Academic software license
 
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Provenance Metadata About This Resource Record

Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016