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Significance Tester for the Accumulation of Reads
eagle-i ID
http://eagle-i.itmat.upenn.edu/i/0000013d-8d96-57e1-2ed7-105480000000
Resource Type
Properties
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Resource Description
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STAR was developed to identify regions enriched for a histone modification based on ChIP-Seq evidence, by identifying regions with a significant accumulation of reads.
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Additional Name
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STAR
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Contact
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Grant, Gregory R., Ph.D.
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Used by
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Computational Biology and Informatics Laboratory
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Operating System
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Unix
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Data Input
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Sequence reads from immunoprecipitated sample
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Data Input
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Sequence reads from non-immunoprecipitated sample (optional input)
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Data Input
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Regions of control bias (optional)
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Data Output
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Significant locations, collapsed into spans
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Data Output
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Max count at any location
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Software purpose
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DNA modification site prediction objective
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Website(s)
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http://www.cbil.upenn.edu/STAR/
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Related Technique
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ChIP-seq assay
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Developed by
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Stoeckert, Christian J Jr., PhD
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Developed by
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Grant, Gregory R., Ph.D.
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Developed by
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Manduchi, Elisabetta., PhD
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Developed by
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Steger, David, Ph.D.
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Developed by
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0000013d-8da7-87c1-2ed7-105480000000
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Developed by
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Lazar, Mitchell A., MD, PhD
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Software license
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Open source software license
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Coded in
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Java
