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EuPathDB

eagle-i ID

http://eagle-i.itmat.upenn.edu/i/0000013d-8e9a-05ab-2ed7-105480000000

Resource Type

  1. Database

Properties

  1. Related Software
    Strategies WDK
  2. Resource Description
    "EuPathDB (formerly ApiDB) is an integrated database covering the eukaryotic pathogens in the genera <i>Acanthamoeba, Annacaliia, Babesia, Crithidia, Cryptosporidium, Edhazardia, Eimeria, Encephalitozoon, Endotrypanum, Entamoeba, Enterocytozoon, Giardia, Gregarina, Hamiltosporidium, Leishmania, Nematocida, Neospora, Nosema, Plasmodium, Theileria, Toxoplasma, Trichomonas, Trypanosoma and Vavraia, Vittaforma</i>. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all of these resources, and the opportunity to leverage orthology for searches across genera. The EuPathDB databases are funded by NIAID and they have strict guidelines as to which organisms we can support. EuPathDB is one of four NIH funded bioinformatics resource centers. Mainly we are to incorporate any eukaryotic pathogen that is deemed emerging or re-emerging (see list). We also have some organisms that are not on the list, those were either added in the past on the behest of the community and additional funding (such as TrichDB), organisms that are related to emerging or re-emerging pathogen (such as Plasmodium or Neospora) and the trypanosomatids (funded as a pilot project by the Bill and Melinda Gates foundation). The EuPathDB family of databases is expected to expand further over the coming years, incorporating new species including the Amoebozoa (Entamoeba, Acanthamoebs), Microsporidia, and additional Apicomplexans, Kinetoplastida and Diplomonads. Of course, we continue collecting data that are being deposited at an ever-increasing rate, including additional genome sequences, microarray data, probe-based hybridization and sequencing data (e.g. ChIP-chip and RNA-Seq), proteomics data, isolate data, phenotype information and metabolomic data." EuPathDB was developed jointly with Cristina Aurrecoechea<sup>1</sup>, Dave Falke<sup>1</sup>, Alan Gingle<sup>3</sup>, Mark Heiges<sup>1</sup>, Jessica C. Kissinger<sup>1,2,5</sup>, Eileen T. Kraemer<sup>4</sup>, Ganesh Srinivasamoorthy<sup>1</sup>, Haiming Wang<sup>1</sup>, Susanne Warrenfeltz<sup>1</sup>, and Betsy Wenthe<sup>1</sup> from the <b><sup>1</sup>Center for Tropical & Emerging Global Diseases, University of Georgia, <sup>2</sup>Department of Genetics, University of Georgia, <sup>3</sup>Center for Applied Genetic Technologies, University of Georgia, <sup>4</sup>Department of Computer Science, University of Georgia,</b> and <b><sup>5</sup>Institute of Bioinformatics, University of Georgia</b>.
  3. Used by
    Computational Biology and Informatics Laboratory
  4. Data Input
    Genomes
  5. Data Input
    SNPs
  6. Data Input
    ChIP-chip data
  7. Data Input
    ChIP-Seq data
  8. Data Input
    ESTs
  9. Data Input
    Microarray data
  10. Data Input
    RNA-Seq data
  11. Data Input
    RT-PCR data
  12. Data Input
    SAGE tags
  13. Data Input
    Proteomics data
  14. Data Input
    Pathways
  15. Topic
    trypanosomiasis
  16. Topic
    giardiasis
  17. Topic
    malaria
  18. Topic
    cryptosporidiosis
  19. Topic
    trichomoniasis
  20. Topic
    coccidiosis
  21. Topic
    vaginitis
  22. Topic
    parasitic protozoa infectious disease
  23. Topic
    theileriasis
  24. Topic
    keratitis
  25. Topic
    leishmaniasis
  26. Topic
    encephalitis
  27. Topic
    babesiosis
  28. Topic
    toxoplasmosis
  29. Related Publication or Documentation
    ApiDB: integrated resources for the apicomplexan bioinformatics resource center
  30. Related Publication or Documentation
    EuPathDB: the eukaryotic pathogen database
  31. Website(s)
    http://eupathdb.org/eupathdb/showXmlDataContent.do?name=XmlQuestions.About#citing
  32. Developed by
    Stoeckert, Christian J., Jr., Ph.D.
  33. Developed by
    Grant, Gregory R., Ph.D.
  34. Developed by
    Roos, David S., Ph.D.
  35. Developed by
    Brunk, Brian P., Ph.D.
  36. Developed by
    Gao, Jerric (Xin)
  37. Developed by
    Fischer, Steve
  38. Developed by
    Treatman, Charles
  39. Developed by
    Iodice, John
  40. Developed by
    Harb, Omar S., Ph.D.
  41. Developed by
    Barreto, Ana
  42. Developed by
    Brestelli, John E., M.S.
  43. Developed by
    Cade, Ja'Shon
  44. Developed by
    Doherty, Ryan
  45. Developed by
    Gajria, Bindu
  46. Developed by
    Hu, Sufen
  47. Developed by
    Li, Wei
  48. Developed by
    Pinney, Deborah F.
  49. Developed by
    Winkelman, Mariann
  50. Developed by
    Dommer, Jennifer
  51. Developed by
    Innamorato, Frank
  52. Developed by
    Nayak, Vishal
  53. Developed by
    Whetzel, Patricia L.
 
RDFRDF
 
Provenance Metadata About This Resource Record
  1. workflow state
    Published
  2. contributor
    fcoldren
  3. created
    2013-03-21T16:21:17.412-04:00
  4. creator
    fcoldren
  5. modified
    2013-03-22T17:32:26.492-04:00

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