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Image processing pipeline

eagle-i ID


Resource Type

  1. Data analysis service


  1. Resource Description
    "Currently, AICAC provides various standardized image processing pipelines, as well as consultation and development of customized pipelines that meet more specialized needs: <b>Standardized pipelines:</b> -- Image preprocessing Tasks such as image reorientation, automated and semi-manual segmentation (e.g. skull stripping), field inhomogeneity correction, motion correction, and other image preparation steps. -- Brain MRI parcelation and ROI measurement Atlas warping and automated definition of ROis in brain images. Multi-atlas labeling using hierarchical parcelation of brain MRI into 262 ROIs hierarchically organized from whole brain ROIs to individual cortical gyri. -- Regional volumetric measurements of brain ROIs, and measurement of co-registered structural (e.g. sMRI, DTI), physiological (bold fMRI, ASL) and molecular images (e.g. amyloid images). -- Voxel-based analysis of brain images, utilizing high-dimensional image warping techniques. -- fiber tractography and basic connectivity analyses. -- measurement of brain and breast tumor size and progression. -- High-dimensional pattern analysis for classification of MRI scans in Alzheimer's Disease and other dementias; SPARE-AD scores from sMRI of the brain. <b>Customized/Specialized pipelines:</b> Needs must be discussed with the directors of the core to determine whether they can be addressed by AICAC's expertise and time constraints, and if they can, a pipeline is developed and applied." "A short description of the project and its image analysis needs should be sent to Evi Parmpi. AICAC will respond with an estimate of the cost, if the project can be assisted by AICAC's facilities."
  2. Contact
    Parmpi, Evi., MS
  3. Topic
    Alzheimer's disease
  4. Topic
  5. Topic
    brain cancer
  6. Topic
    breast cancer
  7. Service Provided by
    Advanced Image Computing and Analytics Core (Penn)
  8. Website(s)
  9. Related Technique
    Magnetic resonance imaging
  10. Related Technique
    Image processing technique
Provenance Metadata About This Resource Record
Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016