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PORT

eagle-i ID

http://eagle-i.itmat.upenn.edu/i/00000149-e8b9-7c48-ed60-4b1280000000

Resource Type

  1. Algorithmic software suite

Properties

  1. Resource Description
    RNA-Seq Normalization & Quantification PORT offers two types of normalization: GENE Normalization and EXON-INTRON-JUNCTION Normalization.
  2. Used by
    ITMAT Bioinformatics Facility (Penn)
  3. Data Input
    Unaligned reads
  4. Data Input
    Aligned reads
  5. Data Input
    Gene info files
  6. Data Input
    Genome fa/fai
  7. Data Output
    Normalized SAM/BAM
  8. Data Output
    Feature count spreadsheets
  9. Data Output
    Normalization factors statistics
  10. Data Output
    Coverage/Junction files
  11. Software purpose
    Data normalization objective
  12. Website(s)
    https://github.com/itmat/Normalization
  13. Related Technique
    Bioinformatics analysis
  14. Related Technique
    RNA sequencing
  15. Developed by
    Grant, Gregory R., Ph.D.
  16. Developed by
    Kim, Eun Ji, M.S.
  17. Coded in
    Perl
 
RDFRDF
 
Provenance Metadata About This Resource Record
  1. workflow owner
    fcoldren
  2. workflow state
    Published
  3. contributor
    fcoldren
  4. created
    2014-11-25T15:54:18.145-05:00
  5. creator
    fcoldren
  6. modified
    2014-12-02T16:15:11.093-05:00

Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016