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HIPPIE: A High-Throughput Identification Pipeline for Promoter Interacting Enhancer elements

eagle-i ID

http://eagle-i.itmat.upenn.edu/i/0000014a-39a6-c298-ed60-4b1280000000

Resource Type

  1. Algorithmic software suite

Properties

  1. Resource Description
    "HIPPIE is the workflow for analyzing Hi-C paired-end reads in FASTQ format and predict enhancer–target gene interactions. HIPPIE streamlines the entire processing phase including reads mapping, quality control and enhancer–target gene prediction as well as characterizing the interactions." HIPPIE can be run locally, designed to run on a high-performance computing cluster with Oracle Grid Engine, or as an Amazon Machine Image.
  2. Used by
    Wang Laboratory
  3. Data Input
    Hi-C raw reads
  4. Data Input
    Reference genome
  5. Data Output
    Candidate enhancer elements annotated with target gene symbol(s)
  6. Software purpose
    Molecular interaction analysis objective
  7. Related Publication or Documentation
    HIPPIE: A high-throughput identification pipeline for promoter interacting enhancer elements
  8. Website(s)
    http://wanglab.pcbi.upenn.edu/hippie/
  9. Software license
    MIT License
 
RDFRDF
 
Provenance Metadata About This Resource Record
  1. workflow state
    Published
  2. contributor
    fcoldren
  3. created
    2014-12-11T09:03:59.716-05:00
  4. creator
    fcoldren
  5. modified
    2014-12-11T14:15:04.331-05:00

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The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016