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VERSE

eagle-i ID

http://eagle-i.itmat.upenn.edu/i/00000153-f7e4-0d58-33dc-9f8080000000

Resource Type

  1. Algorithmic software suite

Properties

  1. Resource Description
    "VERSE is designed for high-performance read summarization for next generation sequencing. VERSE is 50x faster than HTSeq when computing the same gene counts. It introduces a novel, hierarchical assignment scheme, which allows simultaneous quantification of multiple feature types or annotation levels without repeatedly assigning reads. There is also a set of parameters the user can use to fine-tune the assignment logic. VERSE can be readily incorporated into any existing RNA-Seq analysis pipelines. VERSE is implemented in C. It is built on top of featureCounts. VERSE supports Mac OSX and linux systems."
  2. Additional Name
    A versatile and efficient RNA-Seq read counting tool
  3. Used by
    Kim Laboratory: Computational Evolutionary Biology
  4. Version
    1.0.5
  5. Operating System
    LINUX
  6. Operating System
    Mac OSX
  7. Data Input
    BAM/SAM
  8. Data Output
    Feature/Gene counts
  9. Data Output
    Summary file
  10. Software purpose
    Gene expression data transformation objective
  11. Website(s)
    http://kim.bio.upenn.edu/software/verse.shtml
  12. Related Technique
    RNA sequencing
  13. Developed by
    Kim Laboratory: Computational Evolutionary Biology
  14. Software license
    GNU General Public License
  15. Coded in
    C
 
RDFRDF
 
Provenance Metadata About This Resource Record
  1. workflow state
    Published
  2. contributor
    fcoldren
  3. created
    2016-04-08T18:02:37.935-04:00
  4. creator
    fcoldren
  5. modified
    2016-04-08T18:10:38.300-04:00

Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016