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VERSE
eagle-i ID
http://eagle-i.itmat.upenn.edu/i/00000153-f7e4-0d58-33dc-9f8080000000
Resource Type
Properties
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Resource Description
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"VERSE is designed for high-performance read summarization for next generation sequencing. VERSE is 50x faster than HTSeq when computing the same gene counts. It introduces a novel, hierarchical assignment scheme, which allows simultaneous quantification of multiple feature types or annotation levels without repeatedly assigning reads. There is also a set of parameters the user can use to fine-tune the assignment logic. VERSE can be readily incorporated into any existing RNA-Seq analysis pipelines.
VERSE is implemented in C. It is built on top of featureCounts. VERSE supports Mac OSX and linux systems."
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Additional Name
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A versatile and efficient RNA-Seq read counting tool
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Used by
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Kim Laboratory: Computational Evolutionary Biology
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Version
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1.0.5
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Operating System
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LINUX
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Operating System
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Mac OSX
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Data Input
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BAM/SAM
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Data Output
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Feature/Gene counts
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Data Output
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Summary file
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Software purpose
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Gene expression data transformation objective
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Website(s)
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http://kim.bio.upenn.edu/software/verse.shtml
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Related Technique
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RNA sequencing
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Developed by
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Kim Laboratory: Computational Evolutionary Biology
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Software license
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GNU General Public License
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Coded in
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C
